Welcome to the khmer-recipes site!ΒΆ
Hello! This is a list of recipes for various bioinformatics tasks – mostly sequence-oriented for now. The recipes all currently use khmer in one way or another.
Our current list of recipes:
- Recipe 1: Extract reads by coverage
- Recipe 2: Collect a subset of reads from a high-coverage data set
- Recipe 3: Estimate (meta)genome size from unassembled reads
- Recipe 4: Estimate saturation of sequencing
- Recipe 5: Estimate genome size and coverage from shotgun sequencing data
- Recipe 6: Error-trim reads using streaming k-mer abundance trimming
- Recipe 7: Trim metagenome and transcriptome reads with variable coverage k-mer trimming
You can visit the khmer-recipes GitHub site if you would like to contribute, fork, or otherwise investigate. You can also see documentation on Building all the recipes.
LICENSE: This documentation and all textual/graphic site content is licensed under the Creative Commons - 0 License (CC0) -- fork @ github.
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